Functional Mapping and Annotation of Genome-wide association studies

Browse Public Results

You can browse FUMA results which are shared in public by users. Registration is not required to browse public results. Please contact the author of the submitted entry for any question regarding the results.
If you want to modify/delete your published results, please login to your account and go to the SNP2GENE job list page. You can modify/delete the information of publicly available results from the corresponding SNP2GENE job.

List of public results

Click a title to browse the results.

ID	Title	Author	Email	Phenotype	Publication	Sumstats	Sumstats reference	Notes	Publication date
Retrieving data

This is an example page of SNP2GENE job submission. All input options are disabled in this page. Please register to submit your own job.

Load settings from previous job

Title of job submission:

This is not mandatory, but job title might help you to track your jobs.

GWAS summary statistics	Or Use example input (Crohn's disease, Franke et al. 2010). Only for running FLAMES afterwards: Keep input files after job completion for FLAMES. The default of this option is unchecked, which means that your GWAS summary statistics and intermediate files will be deleted once the SNP2GENE process is finished. If this option is checked, you are consenting to keeping your GWAS summary statistics and intermediate files that are generated by FUMA in order to run FLAMES. These files will be kept a maximum of one week to allow you to run FLAMES. After the one week period, they will be deleted permanently. Please only check this option ONLY IF you want to run FLAMES afterwards. If you want to run FLAMES afterwards, please check the documentation for how to prepare the input file
GWAS summary statistics file columns	case insensitive Chromosome: Position: rsID: P-value: Effect allele: "A1" is effect allele by default Non effect allele: OR: Beta: SE:	Optional. Please fill as much as you can. It is not necessary to fill all column names.
Input is build GRCh38
Pre-defined lead SNPs
Identify additional independent lead SNPs
Predefined genomic region

Sample size (N)	Total sample size (integer): OR Column name for N per SNP (text):
Maximum P-value of lead SNPs (<)
Maximum P-value cutoff (<)
r² threshold to define independent significant SNPs (≥)
2nd r² threshold to define lead SNPs (≥)
Reference panel population		OK.
Include variants in reference panel (non-GWAS tagged SNPs in LD)		OK.
Minimum Minor Allele Frequency (≥)
Maximum distance between LD blocks to merge into a locus (< kb)	kb

Positional mapping

Perform positional mapping
Distance to genes or functional consequences of SNPs on genes to map	Maximum distance: kb OR Functional consequences of SNPs on genes: Clear

Optional SNP filtering by functional annotations for positional mapping
This filtering only applies to SNPs mapped by positional mapping criterion. When eQTL mapping is also performed, this filtering can be specified separately.
All these annotations will be available for all SNPs within LD of identified lead SNPs in the result tables, but this filtering affect gene prioritization.

CADD	Perform SNPs filtering based on CADD score.
CADD	Minimum CADD score (≥)
RegulomeDB	Perform SNPs filtering based on RegulomeDB score
RegulomeDB	Maximum RegulomeDB score (categorical)
15-core chromatin state	Perform SNPs filtering based on chromatin state
	Tissue/cell types for 15-core chromatin state Multiple tissue/cell types can be selected.	Clear Select all
	15-core chromatin state maximum state
	15-core chromatin state filtering method
Additional annotations	Annotation datasets Multiple datasets can be selected. Filtering is performed when at least one annotation is selected.	Clear Select all	Optional.
Additional annotations	Annotation filtering method		Optional.

Starting from FUMA v.2.0.0, xQTLs mapping maps SNPs to genes based on xQTLs information. Only significant associations are used. In some certain datasets where it was not possible to obtain the significant associations (bryois2022Brain and jerber2021Dopaminergic), a threshold based on p value is used. The default is 1e-3 but you can modify this.

Please check this option and select at least one dataset to perform xQTLs mapping.

You can view the results of the xQLT mapping in the xQTLs tab of the SNP2GENE result pages. The xQTLs mapping results are available for download in the Downloads tab. Check documentation for how to access these results.

Note that optional SNP filtering by functional annotation is currently not yet available. This functionality will be added in future release.

Note that chromosome X is currently not included in the xQTLs mapping. This will be added in future release.

These results are currently not included in the regional plot. This will be added in future release.

Perform xQTLs Mapping
Select xQTLs datasets:	Clear all selections
eQTLs Datasets	Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all
sqtls Datasets	Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all Clear Select all
pQTLs Datasets	Clear Select all Clear Select all Clear Select all
single-cell eQTLs Datasets	Clear Select all
P-value threshold	(nominal) P-value cutoff (<):	For certain datasets, you need to specify the p value threshold cutoff. If not, the default value of 1e-3 will be used.

Legacy: Starting from FUMA v.2.0.0, this functionality of eQTL Mapping is kept for backward compatibility. To make adding new QTL datasets easier to FUMA, a new functionality below (Perform xQTLs Mapping) is added. You can still use this functionality to carry out analysis as before but new QTL datasets will only be added to the xQTLs Mapping functionality.

Perform eQTL Mapping
Tissue types	Clear Select all From FUMA v1.3.0 GTEx v7, and from FUMA v1.3.5c GTEx v8 have been added. When the "all" option is selected, both GTEx v6, v7 and v8 will be used. To avoid this, please manually select the specific version to use.
eQTL P-value threshold	Use only significant snp-gene pairs: (FDR<0.05) OR (nominal) P-value cutoff (<):

This filtering only applies to SNPs mapped by eQTL mapping criterion.
All these annotations will be available for all SNPs within LD of identified lead SNPs in the result tables, but this filtering affect gene prioritization.

CADD	Perform SNPs filtering based on CADD score.
CADD	Minimum CADD score (≥)
RegulomeDB	Perform SNPs filtering based on RegulomeDB score
RegulomeDB	Maximum RegulomeDB score (categorical)
15-core chromatin state	Perform SNPs filtering based on chromatin state
	Tissue/cell types for 15-core chromatin state Multiple tissue/cell types can be selected.	Clear Select all
	15-core chromatin state maximum state
	15-core chromatin state filtering method
Additional annotations	Annotation datasets Multiple datasets can be selected. Filtering is performed when at least one annotation is selected.	Clear Select all	Optional.
Additional annotations	Annotation filtering method		Optional.

chromatin interaction mapping

Perform chromatin interaction mapping
Builtin chromatin interaction data	Clear Select all
Custom chromatin interactions
FDR threshold	FDR cutoff (<):
Promoter region window	Please specify both upstream and downstream from TSS. For example, "250-500" means 250bp upstream and 500bp downstream from TSS.
Annotate enhancer/promoter regions (Roadmap 111 epigenomes)	Clear Select all
Filter SNPs by enhancers
Filter genes by promoters

Optional SNP filtering by functional annotation for chromatin interaction mapping
This filtering only applies to SNPs mapped by chromatin interaction mapping criterion.
All these annotations will be available for all SNPs within LD of identified lead SNPs in the result tables, but this filtering affect gene prioritization.

CADD	Perform SNPs filtering based on CADD score.
CADD	Minimum CADD score (≥)
RegulomeDB	Perform SNPs filtering based on RegulomeDB score
RegulomeDB	Maximum RegulomeDB score (categorical)
15-core chromatin state	Perform SNPs filtering based on chromatin state
	Tissue/cell types for 15-core chromatin state Multiple tissue/cell types can be selected.	Clear Select all
	15-core chromatin state maximum state
	15-core chromatin state filtering method
Additional annotations	Annotation datasets Multiple datasets can be selected. Filtering is performed when at least one annotation is selected.	Clear Select all	Optional.
Additional annotations	Annotation filtering method		Optional.

Ensembl version		OK.
Gene type Multiple gene type can be selected.		OK.

Exclude MHC region
Extended MHC region e.g. 25000000-33000000

Perform MAGMA
Gene windows	kb One value will set same window size both sides, two values separated by comma will set different window sizes for up- and downstream. e.g. 2,1 will set window sizes 2kb upstream and 1kb downstream of the genes. Maximum window size is limited to 50.
MAGMA gene expression analysis

After submitting, please wait until the file is uploaded, and do not move away from the submission page.

Manhattan Plot (GWAS summary statistics)

Manhattan plot of the input GWAS summary statistics.
For plotting, overlapping data points are not drawn (only SNPs with P-value ≤ 1e-5 are kept, see tutorial for details).

Download the plot as

Manhattan Plot (gene-based test)

This is a manhattan plot of the gene-based test as computed by MAGMA based on your input GWAS summary statistics.
The gene-based P-value is downloadable from 'Download' tab from the left side bar.

Download the plot as
Label top genes.

QQ plot (GWAS summary statisics)

This is a Q-Q plot of GWAS summary statistics.
For plotting purposes, overlapping data points are not drawn (Only SNPs with P-value ≤ 1e-5 are kept, see tutorial for details).

Download the plot as

QQ plot (gene-based test)

This is a Q-Q plot of the gene-based test computed by MAGMA.

Download the plot as

MAGMA Gene-Set Analysis

MAGMA gene-set analysis is performed for curated gene sets and GO terms obtained from MsigDB (see here for details).
The table displays either significant gene sets with P_bon < 0.05 or top 10 gene sets when there are less than 10 significant gene sets. Full results are downloadable from "Download" tab.
Note that MAGMA gene-set analyses uses the full distribution of SNP p-values and is different from a pathway enrichment test as implemented in GENE2FUNC that only tests for enrichment of prioritized genes.

Gene Set	N genes	Beta	Beta STD	SE	P	P_bon

MAGMA Tissue Expression Analysis

MAGMA gene-property analysis is performed for gene expression of user selected data sets.
Details of gene expression data sets are available at Tutorial. Full results are downloadable from "Download" tab.
Note that MAGMA gene-property analyses uses the full distribution of SNP p-values and is different from a enrichment test of DEG (differentially expressed genes) as implemented in GENE2FUNC that only tests for enrichment of prioritised genes.

Order tissue by :

Functional consequences of SNPs on genes

Statistics are available in "annov.stats.txt". The file is downloadable from the "Download" tab.
Download the plot as

Summary per genomic risk locus

Download the plot as

Result tables

Click row to display a regional plot of GWAS summary statistics.

Genomic Locus	uniqID	rsID	chr	pos	P-value	start	end	nSNPs	nGWASSNPs	nIndSigSNPs	IndSigSNPs	nLeadSNPs	LeadSNPs

Click row to display a regional plot of GWAS summary statistics.

No	Genomic Locus	uniqID	rsID	chr	pos	P-value	nIndSigSNPs	IndSigSNPs

Click row to display a regional plot of GWAS summary statistics.

No	Genomic Locus	uniqID	rsID	chr	pos	P-value	nSNPs	nGWASSNPs

This table contain all SNPs in LD of identified lead SNPs (functional filtering for gene mapping is not applied in this table).
In this table "alt" is the risk allele if provided in the input GWAS file. See tutorial for details.

This is the result of annotation by ANNOVAR. SNPs can appear multiple times in this table if they are annotated to more than one genes.

uniqID	chr	bp	Gene	Symbol	Distance	Function	Exonic function	Exon

This table contains prioritized genes based on user defined mapping criteria. Note that these genes do no necessary contain all genes which are locating within genomic loci (depending on mapping paramters).

When signed effect size (beta or OR) is provided in the input GWAS file, risk increasing alleles are aligned to the tested alleles of eQTLs. See tutorial for details.
When P-value or FDR are not available in the original data source, they are replaced with -9.

uniqID	chr	pos	testedAllele	DB	tissue	Gene	Symbol	P-value	FDR	signed_stats	RiskincAllele	alignedDirection

In this table results from xQTLs analysis from FUMA version 2.0.0 are displayed. The table is empty if there are no results.

uniqID	Database	Additional Details (if applicable)	Gene/Protein	Type (cis/trans)	QTL Type	Genomic Risk Loci	Ensemble ID	Original QTL Phenotype

Chromatin interaction

GenomicLocus	region1	region2	FDR	type	DB	tissue/cell	inter/intra	SNPs	Genes

SNPs and overlapped regulatory elements in region 1

uniqID	rsID	chr	pos	regulatory region	type	tissue/cell

Regulatory elements and genes in regions 2

region2	regulatory region	type	tissue/cell	genes

Circos plots of chromatin interactions and eQTLs

Download circos plots (all displayed chromosomes) as

The specific layers and color-coding of the circos plot is described below. See tutorial for details.

Manhattan plot: The most outer layer. Only SNPs with P < 0.05 are displayed. SNPs in genomic risk loci are color-coded as a function of their maximum r² to the one of the independent significant SNPs in the locus, as follows: red (r² > 0.8), orange (r² > 0.6), green (r² > 0.4) and blue (r² > 0.2). SNPs that are not in LD with any of the independent significat SNPs (with r² ≤ 0.2) are grey.
The rsID of the top SNPs in each risk locus are displayed in the most outer layer. Y-axis are raned between 0 to the maximum -log10(P-value) of the SNPs.
Chromosome ring: The second layer. Genomic risk loci are highlighted in blue.
Mapped genes by chromatin interactions or eQTLs: Only mapped genes by either chroamtin interaction and/or eQTLs (conditional on user defined parameters) are displayed. If the gene is mapped only by chromatin interactions or only by eQTLs, it is colored orange or green, respectively. When the gene is mapped by both, it is colored red.
Chromosome ring: The third layer. This is the same as second layer but without coordinates to make it easy to align position of genes with genomic coordinate.
Chromatin interaction links: Links colored orange are chromatin interactions. Since v1.2.7, only the interactions used for mapping based on user defined parameters are displayed.
eQTL lilnks: Links colored green are eQTLs. Since v1.2.7, only the eQTLs used for mapping based on user defined parameters are displayed.

Since creating a circos plot might take long time with a large number of points and links, the maximum number of points and links are limited to 50,000 and 10,000 per plot (chromosome), respectively, in the default plot. Therefore, if there are more than 50,000 SNPs with P-value < 0.05 in a chromosome, top 50,000 SNPs (sorted by P-value) are displayed in the plot. This is same for eQTLs and chromatin interactions, e.g. if there are more than 10,000 eQTLs in a chromosome, top 10,000 eQTLs (sorted by P-value for eQTLs, FDR for chromatin interactions) are displayed in the plot. These can be optimized by downloading config file and re-creating input text files for SNPs and links. Please refer github repository FUMA circos plot for details.

This table only shows subset of information from GWAS catalog.
Please download a output file (gwascatalog.txt) from "Download" tab to get full information

Genomic Locus	IndSigSNP	chr	bp	rsID	PMID	Trait	FirstAuth	Date	P-value

Regional Plot (GWAS association)

Please click one of the row of 'Genomic risk loci', 'lead SNPs' or 'ind. sig. SNPs' tables to display a regional plot.
You can zoom in/out by mouse scroll.
Each SNP is color-coded based on the highest r² to one of the ind. sig. SNPs, if that is greater or equal to the user defined threshold. Other SNPs (i.e. below the user-defined r²) are colored in grey. The top lead SNPs in genomic risk loci, lead SNPs and ind. sig. SNPs are circled in black and colored in dark-purple, purple and red, respectively.

Clear

Regional plot with annotation

Select annotation(s) to plot:
GWAS association statistics
CADD score
RegulomeDB score
Chromatine 15 state

Please select at least one tissue type.
Tissue/Cell types: clear

eQTL

Chromatin interaction

Summary of input genes

Download files

Parameters

Gene expression heatmap

Data set:

Expression Value:

Order genes by:

Order tissues by:

Download the plot as

Differentially expressed genes

Significantly enriched DEG sets (P_bon < 0.05) are highlighted in red.

Order tissue by :

Enrichment of input genes in Gene Sets

Plots and tables only display gene sets with adjusted P-value < 0.05. When adjusted P-value threshold is set to > 0.05, all results passed threshold are included in the GS.txt field downloadable from "Summary" tab.
If there is no significant gene sets (adjusted P-value < 0.05) in user provided custom gene sets, they are not displayed in this page, but all results passed threshold are included in the GS.txt field downloadable from "Summary" tab.

Links to external databases

ENSG	entrezID	symbol	OMIM	UniProtID	DrugBank	GeneCards

Adrenal (1)
E080 (Other) Fetal Adrenal Gland
Blood (27)
E029 (HSC & B-cell) Primary monocytes from peripheral blood
E030 (HSC & B-cell) Primary neutrophils from peripheral blood
E031 (HSC & B-cell) Primary B cells from cord blood
E032 (HSC & B-cell) Primary B cells from peripheral blood
E033 (Blood & T-cell) Primary T cells from cord blood
E034 (Blood & T-cell) Primary T cells from peripheral blood
E035 (HSC & B-cell) Primary hematopoietic stem cells
E036 (HSC & B-cell) Primary hematopoietic stem cells short term culture
E037 (Blood & T-cell) Primary T helper memory cells from peripheral blood 2
E038 (Blood & T-cell) Primary T helper naive cells from peripheral blood
E039 (Blood & T-cell) Primary T helper naive cells from peripheral blood
E040 (Blood & T-cell) Primary T helper memory cells from peripheral blood 1
E041 (Blood & T-cell) Primary T helper cells PMA-I stimulated
E042 (Blood & T-cell) Primary T helper 17 cells PMA-I stimulated
E043 (Blood & T-cell) Primary T helper cells from peripheral blood
E044 (Blood & T-cell) Primary T regulatory cells from peripheral blood
E045 (Blood & T-cell) Primary T cells effector/memory enriched from peripheral blood
E046 (HSC & B-cell) Primary Natural Killer cells from peripheral blood
E047 (Blood & T-cell) Primary T CD8+ naive cells from peripheral blood
E048 (Blood & T-cell) Primary T CD8+ memory cells from peripheral blood
E050 (HSC & B-cell) Primary hematopoietic stem cells G-CSF-mobilized Female
E051 (HSC & B-cell) Primary hematopoietic stem cells G-CSF-mobilized Male
E062 (Blood & T-cell) Primary mononuclear cells from peripheral blood
E115 (ENCODE2012) Dnd41 TCell Leukemia Cell Line
E116 (ENCODE2012) GM12878 Lymphoblastoid Cells
E123 (ENCODE2012) K562 Leukemia Cells
E124 (ENCODE2012) Monocytes-CD14+ RO01746 Primary Cells
Bone (1)
E129 (ENCODE2012) Osteoblast Primary Cells
Brain (13)
E053 (Neurosph) Cortex derived primary cultured neurospheres
E054 (Neurosph) Ganglion Eminence derived primary cultured neurospheres
E067 (Brain) Brain Angular Gyrus
E068 (Brain) Brain Anterior Caudate
E069 (Brain) Brain Cingulate Gyrus
E070 (Brain) Brain Germinal Matrix
E071 (Brain) Brain Hippocampus Middle
E072 (Brain) Brain Inferior Temporal Lobe
E073 (Brain) Brain Dorsolateral Prefrontal Cortex
E074 (Brain) Brain Substantia Nigra
E081 (Brain) Fetal Brain Male
E082 (Brain) Fetal Brain Female
E125 (ENCODE2012) NH-A Astrocytes Primary Cells
Breast (3)
E027 (Epithelial) Breast Myoepithelial Primary Cells
E028 (Epithelial) Breast variant Human Mammary Epithelial Cells (vHMEC)
E119 (ENCODE2012) HMEC Mammary Epithelial Primary Cells
Cervix (1)
E117 (ENCODE2012) HeLa-S3 Cervical Carcinoma Cell Line
ESC (8)
E001 (ESC) ES-I3 Cells
E002 (ESC) ES-WA7 Cells
E003 (ESC) H1 Cells
E008 (ESC) H9 Cells
E014 (ESC) HUES48 Cells
E015 (ESC) HUES6 Cells
E016 (ESC) HUES64 Cells
E024 (ESC) ES-UCSF4 Cells
ESC Derived (9)
E004 (ES-deriv) H1 BMP4 Derived Mesendoderm Cultured Cells
E005 (ES-deriv) H1 BMP4 Derived Trophoblast Cultured Cells
E006 (ES-deriv) H1 Derived Mesenchymal Stem Cells
E007 (ES-deriv) H1 Derived Neuronal Progenitor Cultured Cells
E009 (ES-deriv) H9 Derived Neuronal Progenitor Cultured Cells
E010 (ES-deriv) H9 Derived Neuron Cultured Cells
E011 (ES-deriv) hESC Derived CD184+ Endoderm Cultured Cells
E012 (ES-deriv) hESC Derived CD56+ Ectoderm Cultured Cells
E013 (ES-deriv) hESC Derived CD56+ Mesoderm Cultured Cells
Fat (3)
E023 (Mesench) Mesenchymal Stem Cell Derived Adipocyte Cultured Cells
E025 (Mesench) Adipose Derived Mesenchymal Stem Cell Cultured Cells
E063 (Adipose) Adipose Nuclei
GI Colon (3)
E075 (Digestive) Colonic Mucosa
E076 (Sm. Muscle) Colon Smooth Muscle
E106 (Digestive) Sigmoid Colon
GI Duodenum (2)
E077 (Digestive) Duodenum Mucosa
E078 (Sm. Muscle) Duodenum Smooth Muscle
GI Esophagus (1)
E079 (Digestive) Esophagus
GI Intestine (3)
E084 (Digestive) Fetal Intestine Large
E085 (Digestive) Fetal Intestine Small
E109 (Digestive) Small Intestine
GI Rectum (3)
E101 (Digestive) Rectal Mucosa Donor 29
E102 (Digestive) Rectal Mucosa Donor 31
E103 (Sm. Muscle) Rectal Smooth Muscle
GI Stomach (4)
E092 (Digestive) Fetal Stomach
E094 (Digestive) Gastric
E110 (Digestive) Stomach Mucosa
E111 (Sm. Muscle) Stomach Smooth Muscle
Heart (4)
E083 (Heart) Fetal Heart
E095 (Heart) Left Ventricle
E104 (Heart) Right Atrium
E105 (Heart) Right Ventricle
Kidney (1)
E086 (Other) Fetal Kidney
Liver (2)
E066 (Other) Liver
E118 (ENCODE2012) HepG2 Hepatocellular Carcinoma Cell Line
Lung (5)
E017 (IMR90) IMR90 fetal lung fibroblasts Cell Line
E088 (Other) Fetal Lung
E096 (Other) Lung
E114 (ENCODE2012) A549 EtOH 0.02pct Lung Carcinoma Cell Line
E128 (ENCODE2012) NHLF Lung Fibroblast Primary Cells
Muscle (7)
E052 (Myosat) Muscle Satellite Cultured Cells
E089 (Muscle) Fetal Muscle Trunk
E100 (Muscle) Psoas Muscle
E107 (Muscle) Skeletal Muscle Male
E108 (Muscle) Skeletal Muscle Female
E120 (ENCODE2012) HSMM Skeletal Muscle Myoblasts Cells
E121 (ENCODE2012) HSMM cell derived Skeletal Muscle Myotubes Cells
Muscle Leg (1)
E090 (Muscle) Fetal Muscle Leg
Ovary (1)
E097 (Other) Ovary
Pancreas (2)
E087 (Other) Pancreatic Islets
E098 (Other) Pancreas
Placenta (2)
E091 (Other) Placenta
E099 (Other) Placenta Amnion
Skin (8)
E055 (Epithelial) Foreskin Fibroblast Primary Cells skin01
E056 (Epithelial) Foreskin Fibroblast Primary Cells skin02
E057 (Epithelial) Foreskin Keratinocyte Primary Cells skin02
E058 (Epithelial) Foreskin Keratinocyte Primary Cells skin03
E059 (Epithelial) Foreskin Melanocyte Primary Cells skin01
E061 (Epithelial) Foreskin Melanocyte Primary Cells skin03
E126 (ENCODE2012) NHDF-Ad Adult Dermal Fibroblast Primary Cells
E127 (ENCODE2012) NHEK-Epidermal Keratinocyte Primary Cells
Spleen (1)
E113 (Other) Spleen
Stromal Connective (2)
E026 (Mesench) Bone Marrow Derived Cultured Mesenchymal Stem Cells
E049 (Mesench) Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells
Thymus (2)
E093 (Thymus) Fetal Thymus
E112 (Thymus) Thymus
Vascular (2)
E065 (Heart) Aorta
E122 (ENCODE2012) HUVEC Umbilical Vein Endothelial Primary Cells
iPSC (5)
E018 (iPSC) iPS-15b Cells
E019 (iPSC) iPS-18 Cells
E020 (iPSC) iPS-20b Cells
E021 (iPSC) iPS DF 6.9 Cells
E022 (iPSC) iPS DF 19.11 Cells

PsychENCODE (6)
Enhancers
High confidence enhancers
Prefrontal Cortex (PFC) H3K27ac
Temporal Cortex (TC) H3K27ac
Cerebellar Cortex (CBC) H3K27ac
Transcriptionally Active Regions (TARs)
FANTOM5 (5)
Transcription start sites
Permissive CAGE perks
Robust CAGE perks
Permissive enhancers
Robust enhancers
Brain Open Chromatin Atlas (28)
Neuron from Dorsolateral prefrontal cortex (DLPFC)
Glia from Dorsolateral prefrontal cortex (DLPFC)
Neuron from Orbitofrontal cortex (OFC)
Glia from Orbitofrontal cortex (OFC)
Neuron from Ventrolatelar prefrontal cortex (VLPFC)
Glia from Ventrolatelar prefrontal cortex (VLPFC)
Neuron from Anterior cingulate cortex (ACC)
Glia from Anterior cingulate cortex (ACC)
Neuron from Superior temporal cortex (STC)
Glia from Superior temporal cortex (STC)
Neuron from Inferior temporal cortex (ITC)
Glia from Inferior temporal cortex (ITC)
Neuron from Primary motor cortex (PMC)
Glia from Primary motor cortex (PMC)
Neuron from Insula (INS)
Glia from Insula (INS)
Neuron from Primary visual cortex (PVC)
Glia from Primary visual cortex (PVC)
Neuron from Amygdala (AMY)
Glia from Amygdala (AMY)
Neuron from Hippocampus (HIPP)
Glia from Hippocampus (HIPP)
Neuron from Mediodorsal thalamus (MDT)
Glia from Mediodorsal thalamus (MDT)
Neuron from Nucleus accumbens (NAC)
Glia from Nucleus accumbens (NAC)
Neuron from Putamen (PUT)
Glia from Putamen (PUT)

MetaBrain
Basal Ganglia
Cerebellum
Cortex
Hippocampus
Spinal Cord
GTEx v10
Amygdala
Anterior cingulate cortex BA24
Caudate basal ganglia
Cerebellar Hemisphere
Cerebellum
Cortex
Frontal Cortex BA9
Hippocampus
Hypothalamus
Nucleus accumbens basal ganglia
Putamen basal ganglia
Spinal cord cervical c-1
Substantia nigra

1_suhre_2017 (1)
KORA Plasma
2_sun_2016 (1)
SPIROMICS COPDGene Plasma
3_gudjonsson_2022 (1)
AGES-Reykjavik Serum
4_sun_2018 (1)
INTERVAL Plasma
5_emilsson_2022 (2)
AGES-Reykjavik Serum No Conditional
AGES-Reykjavik Serum Conditional
6_katz_2021 (2)
JacksonHeart Plasma Discovery
JacksonHeart Plasma Meta
7_ferkingstad_2021 (1)
IcelandicCancer deCODE Plasma
8_pietzner_2021 (1)
Fenland Plasma
9_sun_2023 (6)
UKB Plasma Discovery
UKB Plasma Combined
UKB Plasma Middle Eastern
UKB Plasma East Asian
UKB Plasma Central South Asian
UKB Plasma African
10_carland_2023 (3)
Meta 12 cohorts Plasma Pooled
Meta 12 cohorts Plasma Male
Meta 12 cohorts Plasma Female
11_niu_2025 (5)
HOLBAEK Plasma Discovery Relaxed P
HOLBAEK Plasma Discovery Stringent P
HOLBAEK Plasma Independent
HOLBAEK Plasma Replicated Adult
HOLBAEK Plasma Replicated Children
12_yang_2021 (1)
Multi tisssues Plasma

bryois2022Brain
Microglia
Oligodendrocytes
Pericytes
OPCs
Excitatory.neurons
Endothelial.cells
Inhibitory.neurons
Astrocytes
jerber2021Dopaminergic
D11.FPP
D30.FPP
D11.P_FPP
D30.DA
D30.Epen1
D30.Sert
D52.Astro.ROT_treated
D52.Astro.untreated
D52.DA.ROT_treated
D52.DA.untreated
D52.Epen1.ROT_treated
D52.Epen1.untreated
D52.pseudobulk.untreated
D52.Sert.ROT_treated
D52.Sert.untreated
singlebrain
Ast
Ast1
Ast2
Ast3
Ast4
End
Ext
Ext1
Ext2
Ext3
Ext4
Ext5
Ext6
Ext7
Ext8
IN
IN1
IN2
IN3
IN4
IN5
IN6
IN7
MG
MG1
MG2
MG3
MG4
MiGA3
OD
OD1
OD2
OD3
OPC
OPC1
OPC2
brainscope
Astro
Chandelier__Pvalb
L5.6.NP
L4.IT
L2.3.IT
L6.CT
L6b
L5.IT
Micro.PVM
Lamp5
Lamp5.Lhx6
L6.IT
Sst__Sst.Chodl
PC
OPC
Oligo
Vip

TIGER (1)
Alonso et al. 2021 Pancreatic islets
InsPIRE (1)
Viñuela et al. 2020 Pancreatic islets
EyeGEx (1)
EyeGEx
eQTL catalogue (45)
Alasoo 2018 macrophage IFNg Salmonella
Alasoo 2018 macrophage IFNg
Alasoo 2018 macrophage naive
Alasoo 2018 macrophage Salmonella
BLUEPRINT monocyte
BLUEPRINT neutrophil
BLUEPRINT T-cell
BrainSeq brain
CEDAR B-cell CD19
CEDAR ileum
CEDAR monocyte CD14
CEDAR neutrophil CD15
CEDAR platelet
CEDAR rectum
CEDAR T-cell CD4
CEDAR T-cell CD8
CEDAR transverse colon
Fairfax 2012 B-cell CD19
Fairfax 2014 IFN24
Fairfax 2014 LPS24
Fairfax 2014 LPS2
Fairfax 2014 naive
GENCORD fibroblast
GENCORD LCL
GENCORD T-cell
GEUVADIS LCL
HipSci iPSC
Kasela 2017 T-cell CD4
Kasela 2017 T-cell CD8
Lepik 2017 blood
Naranbhai 2015 neutrophil CD16
Nedelec 2016 macrophage Listeria
Nedelec 2016 macrophage naive
Nedelec 2016 macrophage Salmonella
Quach 2016 monocyte IAV
Quach 2016 monocyte LPS
Quach 2016 monocyte naive
Quach 2016 monocyte Pam3CSK4
Quach 2016 monocyte R848
Schwartzentruber 2018 sensory neuron
TwinsUK blood
TwinsUK fat
TwinsUK LCL
TwinsUK skin
van de Bunt 2015 pancreatic islet
PsychENCODE (1)
PsychENCODE eQTLs
van der Wijst et al. scRNA eQTLs (9)
B cells
Dendritic cells
Natural Killer cells
Monocytes
Classical Monocyte
Non-classical Monocytes
CD4 T cells
CD8 T cells
PBMC
DICE (15)
Naive B cells
Naive CD4 T cells
Naive (activated) CD4 T cells
Naive CD8 T cells
Naive (activated) CD8 T cells
Classical Monocytes
Non-classical Monocytes
Natual Killer cells
TFH CD4 T cells
TH1 CD4 T cells
TH17 CD4 T cells
TH1-17 CD4 T cells
TH2 CD4 T cells
Memory TREG CD4 T cells
Naive TREG CD4 T cells
eQTLGen (2)
eQTLGen cis-eQTLs
eQTLGen trans-eQTLs
Blood eQTLs (2)
Westra et al. (2013) Blood eQTL Browser
Zhernakova et al. (2017) BIOS QTL Browser
MuTHER (3)
MuTHER Adipose
MuTHER LCL
MuTHER Skin
xQTLServer (1)
xQTLServer cis eQTLs
ComminMind Consortium (4)
CMC with SVA cis eQTLs
CMC with SVA trans eQTLs
CMC without SVA cis eQTLs
CMC without SVA trans eQTLs
BRAINEAC (11)
BRAINEAC Cerebellar cortex
BRAINEAC Frontal cortex
BRAINEAC Hippocampus
BRAINEAC Inferior olivary nucleus (sub-dissected from the medulla)
BRAINEAC Occipital cortex
BRAINEAC Putamen (at the level of the anterior commissure)
BRAINEAC Substantia nigra
BRAINEAC Temporal cortex
BRAINEAC Thalamus (at the level of the lateral geniculate nucleus)
BRAINEAC Intralobular white matter
BRAINEAC Averaged expression of 10 brain regions
GTEx v8 Adipose Tissue (2)
GTEx Adipose Subcutaneous
GTEx Adipose Visceral Omentum
GTEx v8 Adrenal Gland (1)
GTEx Adrenal Gland
GTEx v8 Blood (2)
GTEx Cells EBV-transformed lymphocytes
GTEx Whole Blood
GTEx v8 Blood Vessel (3)
GTEx Artery Aorta
GTEx Artery Coronary
GTEx Artery Tibial
GTEx v8 Brain (13)
GTEx Brain Amygdala
GTEx Brain Anterior cingulate cortex BA24
GTEx Brain Caudate basal ganglia
GTEx Brain Cerebellar Hemisphere
GTEx Brain Cerebellum
GTEx Brain Cortex
GTEx Brain Frontal Cortex BA9
GTEx Brain Hippocampus
GTEx Brain Hypothalamus
GTEx Brain Nucleus accumbens basal ganglia
GTEx Brain Putamen basal ganglia
GTEx Brain Spinal cord cervical c-1
GTEx Brain Substantia nigra
GTEx v8 Breast (1)
GTEx Breast Mammary Tissue
GTEx v8 Colon (2)
GTEx Colon Sigmoid
GTEx Colon Transverse
GTEx v8 Esophagus (3)
GTEx Esophagus Gastroesophageal Junction
GTEx Esophagus Mucosa
GTEx Esophagus Muscularis
GTEx v8 Heart (2)
GTEx Heart Atrial Appendage
GTEx Heart Left Ventricle
GTEx v8 Kidney (1)
GTEx Kidney Cortex
GTEx v8 Liver (1)
GTEx Liver
GTEx v8 Lung (1)
GTEx Lung
GTEx v8 Muscle (1)
GTEx Muscle Skeletal
GTEx v8 Nerve (1)
GTEx Nerve Tibial
GTEx v8 Ovary (1)
GTEx Ovary
GTEx v8 Pancreas (1)
GTEx Pancreas
GTEx v8 Pituitary (1)
GTEx Pituitary
GTEx v8 Prostate (1)
GTEx Prostate
GTEx v8 Salivary Gland (1)
GTEx Minor Salivary Gland
GTEx v8 Skin (3)
GTEx Cells Cultured fibroblasts
GTEx Skin Not Sun Exposed Suprapubic
GTEx Skin Sun Exposed Lower leg
GTEx v8 Small Intestine (1)
GTEx Small Intestine Terminal Ileum
GTEx v8 Spleen (1)
GTEx Spleen
GTEx v8 Stomach (1)
GTEx Stomach
GTEx v8 Testis (1)
GTEx Testis
GTEx v8 Thyroid (1)
GTEx Thyroid
GTEx v8 Uterus (1)
GTEx Uterus
GTEx v8 Vagina (1)
GTEx Vagina
GTEx v7 Adipose Tissue (2)
GTEx Adipose Subcutaneous
GTEx Adipose Visceral Omentum
GTEx v7 Adrenal Gland (1)
GTEx Adrenal Gland
GTEx v7 Blood (2)
GTEx Cells EBV-transformed lymphocytes
GTEx Whole Blood
GTEx v7 Blood Vessel (3)
GTEx Artery Aorta
GTEx Artery Coronary
GTEx Artery Tibial
GTEx v7 Brain (13)
GTEx Brain Amygdala
GTEx Brain Anterior cingulate cortex BA24
GTEx Brain Caudate basal ganglia
GTEx Brain Cerebellar Hemisphere
GTEx Brain Cerebellum
GTEx Brain Cortex
GTEx Brain Frontal Cortex BA9
GTEx Brain Hippocampus
GTEx Brain Hypothalamus
GTEx Brain Nucleus accumbens basal ganglia
GTEx Brain Putamen basal ganglia
GTEx Brain Spinal cord cervical c-1
GTEx Brain Substantia nigra
GTEx v7 Breast (1)
GTEx Breast Mammary Tissue
GTEx v7 Colon (2)
GTEx Colon Sigmoid
GTEx Colon Transverse
GTEx v7 Esophagus (3)
GTEx Esophagus Gastroesophageal Junction
GTEx Esophagus Mucosa
GTEx Esophagus Muscularis
GTEx v7 Heart (2)
GTEx Heart Atrial Appendage
GTEx Heart Left Ventricle
GTEx v7 Liver (1)
GTEx Liver
GTEx v7 Lung (1)
GTEx Lung
GTEx v7 Muscle (1)
GTEx Muscle Skeletal
GTEx v7 Nerve (1)
GTEx Nerve Tibial
GTEx v7 Ovary (1)
GTEx Ovary
GTEx v7 Pancreas (1)
GTEx Pancreas
GTEx v7 Pituitary (1)
GTEx Pituitary
GTEx v7 Prostate (1)
GTEx Prostate
GTEx v7 Salivary Gland (1)
GTEx Minor Salivary Gland
GTEx v7 Skin (3)
GTEx Cells Transformed fibroblasts
GTEx Skin Not Sun Exposed Suprapubic
GTEx Skin Sun Exposed Lower leg
GTEx v7 Small Intestine (1)
GTEx Small Intestine Terminal Ileum
GTEx v7 Spleen (1)
GTEx Spleen
GTEx v7 Stomach (1)
GTEx Stomach
GTEx v7 Testis (1)
GTEx Testis
GTEx v7 Thyroid (1)
GTEx Thyroid
GTEx v7 Uterus (1)
GTEx Uterus
GTEx v7 Vagina (1)
GTEx Vagina
GTEx v6 Adipose Tissue (2)
GTEx Adipose Subcutaneous
GTEx Adipose Visceral Omentum
GTEx v6 Adrenal Gland (1)
GTEx Adrenal Gland
GTEx v6 Blood (2)
GTEx Cells EBV-transformed lymphocytes
GTEx Whole Blood
GTEx v6 Blood Vessel (3)
GTEx Artery Aorta
GTEx Artery Coronary
GTEx Artery Tibial
GTEx v6 Brain (10)
GTEx Brain Anterior cingulate cortex BA24
GTEx Brain Caudate basal ganglia
GTEx Brain Cerebellar Hemisphere
GTEx Brain Cerebellum
GTEx Brain Cortex
GTEx Brain Frontal Cortex BA9
GTEx Brain Hippocampus
GTEx Brain Hypothalamus
GTEx Brain Nucleus accumbens basal ganglia
GTEx Brain Putamen basal ganglia
GTEx v6 Breast (1)
GTEx Breast Mammary Tissue
GTEx v6 Colon (2)
GTEx Colon Sigmoid
GTEx Colon Transverse
GTEx v6 Esophagus (3)
GTEx Esophagus Gastroesophageal Junction
GTEx Esophagus Mucosa
GTEx Esophagus Muscularis
GTEx v6 Heart (2)
GTEx Heart Atrial Appendage
GTEx Heart Left Ventricle
GTEx v6 Liver (1)
GTEx Liver
GTEx v6 Lung (1)
GTEx Lung
GTEx v6 Muscle (1)
GTEx Muscle Skeletal
GTEx v6 Nerve (1)
GTEx Nerve Tibial
GTEx v6 Ovary (1)
GTEx Ovary
GTEx v6 Pancreas (1)
GTEx Pancreas
GTEx v6 Pituitary (1)
GTEx Pituitary
GTEx v6 Prostate (1)
GTEx Prostate
GTEx v6 Skin (3)
GTEx Cells Transformed fibroblasts
GTEx Skin Not Sun Exposed Suprapubic
GTEx Skin Sun Exposed Lower leg
GTEx v6 Small Intestine (1)
GTEx Small Intestine Terminal Ileum
GTEx v6 Spleen (1)
GTEx Spleen
GTEx v6 Stomach (1)
GTEx Stomach
GTEx v6 Testis (1)
GTEx Testis
GTEx v6 Thyroid (1)
GTEx Thyroid
GTEx v6 Uterus (1)
GTEx Uterus
GTEx v6 Vagina (1)
GTEx Vagina

Adrenal (1)
E080 (Other) Fetal Adrenal Gland
Blood (27)
E029 (HSC & B-cell) Primary monocytes from peripheral blood
E030 (HSC & B-cell) Primary neutrophils from peripheral blood
E031 (HSC & B-cell) Primary B cells from cord blood
E032 (HSC & B-cell) Primary B cells from peripheral blood
E033 (Blood & T-cell) Primary T cells from cord blood
E034 (Blood & T-cell) Primary T cells from peripheral blood
E035 (HSC & B-cell) Primary hematopoietic stem cells
E036 (HSC & B-cell) Primary hematopoietic stem cells short term culture
E037 (Blood & T-cell) Primary T helper memory cells from peripheral blood 2
E038 (Blood & T-cell) Primary T helper naive cells from peripheral blood
E039 (Blood & T-cell) Primary T helper naive cells from peripheral blood
E040 (Blood & T-cell) Primary T helper memory cells from peripheral blood 1
E041 (Blood & T-cell) Primary T helper cells PMA-I stimulated
E042 (Blood & T-cell) Primary T helper 17 cells PMA-I stimulated
E043 (Blood & T-cell) Primary T helper cells from peripheral blood
E044 (Blood & T-cell) Primary T regulatory cells from peripheral blood
E045 (Blood & T-cell) Primary T cells effector/memory enriched from peripheral blood
E046 (HSC & B-cell) Primary Natural Killer cells from peripheral blood
E047 (Blood & T-cell) Primary T CD8+ naive cells from peripheral blood
E048 (Blood & T-cell) Primary T CD8+ memory cells from peripheral blood
E050 (HSC & B-cell) Primary hematopoietic stem cells G-CSF-mobilized Female
E051 (HSC & B-cell) Primary hematopoietic stem cells G-CSF-mobilized Male
E062 (Blood & T-cell) Primary mononuclear cells from peripheral blood
E115 (ENCODE2012) Dnd41 TCell Leukemia Cell Line
E116 (ENCODE2012) GM12878 Lymphoblastoid Cells
E123 (ENCODE2012) K562 Leukemia Cells
E124 (ENCODE2012) Monocytes-CD14+ RO01746 Primary Cells
Bone (1)
E129 (ENCODE2012) Osteoblast Primary Cells
Brain (13)
E053 (Neurosph) Cortex derived primary cultured neurospheres
E054 (Neurosph) Ganglion Eminence derived primary cultured neurospheres
E067 (Brain) Brain Angular Gyrus
E068 (Brain) Brain Anterior Caudate
E069 (Brain) Brain Cingulate Gyrus
E070 (Brain) Brain Germinal Matrix
E071 (Brain) Brain Hippocampus Middle
E072 (Brain) Brain Inferior Temporal Lobe
E073 (Brain) Brain Dorsolateral Prefrontal Cortex
E074 (Brain) Brain Substantia Nigra
E081 (Brain) Fetal Brain Male
E082 (Brain) Fetal Brain Female
E125 (ENCODE2012) NH-A Astrocytes Primary Cells
Breast (3)
E027 (Epithelial) Breast Myoepithelial Primary Cells
E028 (Epithelial) Breast variant Human Mammary Epithelial Cells (vHMEC)
E119 (ENCODE2012) HMEC Mammary Epithelial Primary Cells
Cervix (1)
E117 (ENCODE2012) HeLa-S3 Cervical Carcinoma Cell Line
ESC (8)
E001 (ESC) ES-I3 Cells
E002 (ESC) ES-WA7 Cells
E003 (ESC) H1 Cells
E008 (ESC) H9 Cells
E014 (ESC) HUES48 Cells
E015 (ESC) HUES6 Cells
E016 (ESC) HUES64 Cells
E024 (ESC) ES-UCSF4 Cells
ESC Derived (9)
E004 (ES-deriv) H1 BMP4 Derived Mesendoderm Cultured Cells
E005 (ES-deriv) H1 BMP4 Derived Trophoblast Cultured Cells
E006 (ES-deriv) H1 Derived Mesenchymal Stem Cells
E007 (ES-deriv) H1 Derived Neuronal Progenitor Cultured Cells
E009 (ES-deriv) H9 Derived Neuronal Progenitor Cultured Cells
E010 (ES-deriv) H9 Derived Neuron Cultured Cells
E011 (ES-deriv) hESC Derived CD184+ Endoderm Cultured Cells
E012 (ES-deriv) hESC Derived CD56+ Ectoderm Cultured Cells
E013 (ES-deriv) hESC Derived CD56+ Mesoderm Cultured Cells
Fat (3)
E023 (Mesench) Mesenchymal Stem Cell Derived Adipocyte Cultured Cells
E025 (Mesench) Adipose Derived Mesenchymal Stem Cell Cultured Cells
E063 (Adipose) Adipose Nuclei
GI Colon (3)
E075 (Digestive) Colonic Mucosa
E076 (Sm. Muscle) Colon Smooth Muscle
E106 (Digestive) Sigmoid Colon
GI Duodenum (2)
E077 (Digestive) Duodenum Mucosa
E078 (Sm. Muscle) Duodenum Smooth Muscle
GI Esophagus (1)
E079 (Digestive) Esophagus
GI Intestine (3)
E084 (Digestive) Fetal Intestine Large
E085 (Digestive) Fetal Intestine Small
E109 (Digestive) Small Intestine
GI Rectum (3)
E101 (Digestive) Rectal Mucosa Donor 29
E102 (Digestive) Rectal Mucosa Donor 31
E103 (Sm. Muscle) Rectal Smooth Muscle
GI Stomach (4)
E092 (Digestive) Fetal Stomach
E094 (Digestive) Gastric
E110 (Digestive) Stomach Mucosa
E111 (Sm. Muscle) Stomach Smooth Muscle
Heart (4)
E083 (Heart) Fetal Heart
E095 (Heart) Left Ventricle
E104 (Heart) Right Atrium
E105 (Heart) Right Ventricle
Kidney (1)
E086 (Other) Fetal Kidney
Liver (2)
E066 (Other) Liver
E118 (ENCODE2012) HepG2 Hepatocellular Carcinoma Cell Line
Lung (5)
E017 (IMR90) IMR90 fetal lung fibroblasts Cell Line
E088 (Other) Fetal Lung
E096 (Other) Lung
E114 (ENCODE2012) A549 EtOH 0.02pct Lung Carcinoma Cell Line
E128 (ENCODE2012) NHLF Lung Fibroblast Primary Cells
Muscle (7)
E052 (Myosat) Muscle Satellite Cultured Cells
E089 (Muscle) Fetal Muscle Trunk
E100 (Muscle) Psoas Muscle
E107 (Muscle) Skeletal Muscle Male
E108 (Muscle) Skeletal Muscle Female
E120 (ENCODE2012) HSMM Skeletal Muscle Myoblasts Cells
E121 (ENCODE2012) HSMM cell derived Skeletal Muscle Myotubes Cells
Muscle Leg (1)
E090 (Muscle) Fetal Muscle Leg
Ovary (1)
E097 (Other) Ovary
Pancreas (2)
E087 (Other) Pancreatic Islets
E098 (Other) Pancreas
Placenta (2)
E091 (Other) Placenta
E099 (Other) Placenta Amnion
Skin (8)
E055 (Epithelial) Foreskin Fibroblast Primary Cells skin01
E056 (Epithelial) Foreskin Fibroblast Primary Cells skin02
E057 (Epithelial) Foreskin Keratinocyte Primary Cells skin02
E058 (Epithelial) Foreskin Keratinocyte Primary Cells skin03
E059 (Epithelial) Foreskin Melanocyte Primary Cells skin01
E061 (Epithelial) Foreskin Melanocyte Primary Cells skin03
E126 (ENCODE2012) NHDF-Ad Adult Dermal Fibroblast Primary Cells
E127 (ENCODE2012) NHEK-Epidermal Keratinocyte Primary Cells
Spleen (1)
E113 (Other) Spleen
Stromal Connective (2)
E026 (Mesench) Bone Marrow Derived Cultured Mesenchymal Stem Cells
E049 (Mesench) Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells
Thymus (2)
E093 (Thymus) Fetal Thymus
E112 (Thymus) Thymus
Vascular (2)
E065 (Heart) Aorta
E122 (ENCODE2012) HUVEC Umbilical Vein Endothelial Primary Cells
iPSC (5)
E018 (iPSC) iPS-15b Cells
E019 (iPSC) iPS-18 Cells
E020 (iPSC) iPS-20b Cells
E021 (iPSC) iPS DF 6.9 Cells
E022 (iPSC) iPS DF 19.11 Cells

PsychENCODE (6)
Enhancers
High confidence enhancers
Prefrontal Cortex (PFC) H3K27ac
Temporal Cortex (TC) H3K27ac
Cerebellar Cortex (CBC) H3K27ac
Transcriptionally Active Regions (TARs)
FANTOM5 (5)
Transcription start sites
Permissive CAGE perks
Robust CAGE perks
Permissive enhancers
Robust enhancers
Brain Open Chromatin Atlas (28)
Neuron from Dorsolateral prefrontal cortex (DLPFC)
Glia from Dorsolateral prefrontal cortex (DLPFC)
Neuron from Orbitofrontal cortex (OFC)
Glia from Orbitofrontal cortex (OFC)
Neuron from Ventrolatelar prefrontal cortex (VLPFC)
Glia from Ventrolatelar prefrontal cortex (VLPFC)
Neuron from Anterior cingulate cortex (ACC)
Glia from Anterior cingulate cortex (ACC)
Neuron from Superior temporal cortex (STC)
Glia from Superior temporal cortex (STC)
Neuron from Inferior temporal cortex (ITC)
Glia from Inferior temporal cortex (ITC)
Neuron from Primary motor cortex (PMC)
Glia from Primary motor cortex (PMC)
Neuron from Insula (INS)
Glia from Insula (INS)
Neuron from Primary visual cortex (PVC)
Glia from Primary visual cortex (PVC)
Neuron from Amygdala (AMY)
Glia from Amygdala (AMY)
Neuron from Hippocampus (HIPP)
Glia from Hippocampus (HIPP)
Neuron from Mediodorsal thalamus (MDT)
Glia from Mediodorsal thalamus (MDT)
Neuron from Nucleus accumbens (NAC)
Glia from Nucleus accumbens (NAC)
Neuron from Putamen (PUT)
Glia from Putamen (PUT)

PsychENCODE EP links (one way)
PsychENCODE Promoter anchored loops
FANTOM EP correlations cell type (one way)
FANTOM EP correlations organ (one way)
HiC(Giusti-Rodriguez et al. 2019) Adult cortex
HiC(Giusti-Rodriguez et al. 2019) Fetal cortex
HiC(GSE87112) Adrenal
HiC(GSE87112) Aorta
HiC(GSE87112) Bladder
HiC(GSE87112) Dorsolateral_Prefrontal_Cortex
HiC(GSE87112) Hippocampus
HiC(GSE87112) Left_Ventricle
HiC(GSE87112) Liver
HiC(GSE87112) Lung
HiC(GSE87112) Ovary
HiC(GSE87112) Pancreas
HiC(GSE87112) Psoas
HiC(GSE87112) Right_Ventricle
HiC(GSE87112) Small_Bowel
HiC(GSE87112) Spleen
HiC(GSE87112) GM12878
HiC(GSE87112) IMR90
HiC(GSE87112) Mesenchymal_Stem_Cell
HiC(GSE87112) Mesendoderm
HiC(GSE87112) Neural_Progenitor_Cell
HiC(GSE87112) Trophoblast-like_Cell
HiC(GSE87112) hESC

Adrenal (1)
E080 (Other) Fetal Adrenal Gland
Blood (23)
E029 (HSC & B-cell) Primary monocytes from peripheral blood
E030 (HSC & B-cell) Primary neutrophils from peripheral blood
E031 (HSC & B-cell) Primary B cells from cord blood
E032 (HSC & B-cell) Primary B cells from peripheral blood
E033 (Blood & T-cell) Primary T cells from cord blood
E034 (Blood & T-cell) Primary T cells from peripheral blood
E035 (HSC & B-cell) Primary hematopoietic stem cells
E036 (HSC & B-cell) Primary hematopoietic stem cells short term culture
E037 (Blood & T-cell) Primary T helper memory cells from peripheral blood 2
E038 (Blood & T-cell) Primary T helper naive cells from peripheral blood
E039 (Blood & T-cell) Primary T helper naive cells from peripheral blood
E040 (Blood & T-cell) Primary T helper memory cells from peripheral blood 1
E041 (Blood & T-cell) Primary T helper cells PMA-I stimulated
E042 (Blood & T-cell) Primary T helper 17 cells PMA-I stimulated
E043 (Blood & T-cell) Primary T helper cells from peripheral blood
E044 (Blood & T-cell) Primary T regulatory cells from peripheral blood
E045 (Blood & T-cell) Primary T cells effector/memory enriched from peripheral blood
E046 (HSC & B-cell) Primary Natural Killer cells from peripheral blood
E047 (Blood & T-cell) Primary T CD8+ naive cells from peripheral blood
E048 (Blood & T-cell) Primary T CD8+ memory cells from peripheral blood
E050 (HSC & B-cell) Primary hematopoietic stem cells G-CSF-mobilized Female
E051 (HSC & B-cell) Primary hematopoietic stem cells G-CSF-mobilized Male
E062 (Blood & T-cell) Primary mononuclear cells from peripheral blood
Brain (12)
E053 (Neurosph) Cortex derived primary cultured neurospheres
E054 (Neurosph) Ganglion Eminence derived primary cultured neurospheres
E067 (Brain) Brain Angular Gyrus
E068 (Brain) Brain Anterior Caudate
E069 (Brain) Brain Cingulate Gyrus
E070 (Brain) Brain Germinal Matrix
E071 (Brain) Brain Hippocampus Middle
E072 (Brain) Brain Inferior Temporal Lobe
E073 (Brain) Brain Dorsolateral Prefrontal Cortex
E074 (Brain) Brain Substantia Nigra
E081 (Brain) Fetal Brain Male
E082 (Brain) Fetal Brain Female
Breast (2)
E027 (Epithelial) Breast Myoepithelial Primary Cells
E028 (Epithelial) Breast variant Human Mammary Epithelial Cells (vHMEC)
ESC (8)
E001 (ESC) ES-I3 Cells
E002 (ESC) ES-WA7 Cells
E003 (ESC) H1 Cells
E008 (ESC) H9 Cells
E014 (ESC) HUES48 Cells
E015 (ESC) HUES6 Cells
E016 (ESC) HUES64 Cells
E024 (ESC) ES-UCSF4 Cells
ESC Derived (9)
E004 (ES-deriv) H1 BMP4 Derived Mesendoderm Cultured Cells
E005 (ES-deriv) H1 BMP4 Derived Trophoblast Cultured Cells
E006 (ES-deriv) H1 Derived Mesenchymal Stem Cells
E007 (ES-deriv) H1 Derived Neuronal Progenitor Cultured Cells
E009 (ES-deriv) H9 Derived Neuronal Progenitor Cultured Cells
E010 (ES-deriv) H9 Derived Neuron Cultured Cells
E011 (ES-deriv) hESC Derived CD184+ Endoderm Cultured Cells
E012 (ES-deriv) hESC Derived CD56+ Ectoderm Cultured Cells
E013 (ES-deriv) hESC Derived CD56+ Mesoderm Cultured Cells
Fat (3)
E023 (Mesench) Mesenchymal Stem Cell Derived Adipocyte Cultured Cells
E025 (Mesench) Adipose Derived Mesenchymal Stem Cell Cultured Cells
E063 (Adipose) Adipose Nuclei
GI Colon (3)
E075 (Digestive) Colonic Mucosa
E076 (Sm. Muscle) Colon Smooth Muscle
E106 (Digestive) Sigmoid Colon
GI Duodenum (2)
E077 (Digestive) Duodenum Mucosa
E078 (Sm. Muscle) Duodenum Smooth Muscle
GI Esophagus (1)
E079 (Digestive) Esophagus
GI Intestine (3)
E084 (Digestive) Fetal Intestine Large
E085 (Digestive) Fetal Intestine Small
E109 (Digestive) Small Intestine
GI Rectum (3)
E101 (Digestive) Rectal Mucosa Donor 29
E102 (Digestive) Rectal Mucosa Donor 31
E103 (Sm. Muscle) Rectal Smooth Muscle
GI Stomach (4)
E092 (Digestive) Fetal Stomach
E094 (Digestive) Gastric
E110 (Digestive) Stomach Mucosa
E111 (Sm. Muscle) Stomach Smooth Muscle
Heart (4)
E083 (Heart) Fetal Heart
E095 (Heart) Left Ventricle
E104 (Heart) Right Atrium
E105 (Heart) Right Ventricle
Kidney (1)
E086 (Other) Fetal Kidney
Liver (1)
E066 (Other) Liver
Lung (3)
E017 (IMR90) IMR90 fetal lung fibroblasts Cell Line
E088 (Other) Fetal Lung
E096 (Other) Lung
Muscle (5)
E052 (Myosat) Muscle Satellite Cultured Cells
E089 (Muscle) Fetal Muscle Trunk
E100 (Muscle) Psoas Muscle
E107 (Muscle) Skeletal Muscle Male
E108 (Muscle) Skeletal Muscle Female
Muscle Leg (1)
E090 (Muscle) Fetal Muscle Leg
Ovary (1)
E097 (Other) Ovary
Pancreas (2)
E087 (Other) Pancreatic Islets
E098 (Other) Pancreas
Placenta (2)
E091 (Other) Placenta
E099 (Other) Placenta Amnion
Skin (6)
E055 (Epithelial) Foreskin Fibroblast Primary Cells skin01
E056 (Epithelial) Foreskin Fibroblast Primary Cells skin02
E057 (Epithelial) Foreskin Keratinocyte Primary Cells skin02
E058 (Epithelial) Foreskin Keratinocyte Primary Cells skin03
E059 (Epithelial) Foreskin Melanocyte Primary Cells skin01
E061 (Epithelial) Foreskin Melanocyte Primary Cells skin03
Spleen (1)
E113 (Other) Spleen
Stromal Connective (2)
E026 (Mesench) Bone Marrow Derived Cultured Mesenchymal Stem Cells
E049 (Mesench) Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells
Thymus (2)
E093 (Thymus) Fetal Thymus
E112 (Thymus) Thymus
Vascular (1)
E065 (Heart) Aorta
iPSC (5)
E018 (iPSC) iPS-15b Cells
E019 (iPSC) iPS-18 Cells
E020 (iPSC) iPS-20b Cells
E021 (iPSC) iPS DF 6.9 Cells
E022 (iPSC) iPS DF 19.11 Cells

Adrenal (1)
E080 (Other) Fetal Adrenal Gland
Blood (27)
E029 (HSC & B-cell) Primary monocytes from peripheral blood
E030 (HSC & B-cell) Primary neutrophils from peripheral blood
E031 (HSC & B-cell) Primary B cells from cord blood
E032 (HSC & B-cell) Primary B cells from peripheral blood
E033 (Blood & T-cell) Primary T cells from cord blood
E034 (Blood & T-cell) Primary T cells from peripheral blood
E035 (HSC & B-cell) Primary hematopoietic stem cells
E036 (HSC & B-cell) Primary hematopoietic stem cells short term culture
E037 (Blood & T-cell) Primary T helper memory cells from peripheral blood 2
E038 (Blood & T-cell) Primary T helper naive cells from peripheral blood
E039 (Blood & T-cell) Primary T helper naive cells from peripheral blood
E040 (Blood & T-cell) Primary T helper memory cells from peripheral blood 1
E041 (Blood & T-cell) Primary T helper cells PMA-I stimulated
E042 (Blood & T-cell) Primary T helper 17 cells PMA-I stimulated
E043 (Blood & T-cell) Primary T helper cells from peripheral blood
E044 (Blood & T-cell) Primary T regulatory cells from peripheral blood
E045 (Blood & T-cell) Primary T cells effector/memory enriched from peripheral blood
E046 (HSC & B-cell) Primary Natural Killer cells from peripheral blood
E047 (Blood & T-cell) Primary T CD8+ naive cells from peripheral blood
E048 (Blood & T-cell) Primary T CD8+ memory cells from peripheral blood
E050 (HSC & B-cell) Primary hematopoietic stem cells G-CSF-mobilized Female
E051 (HSC & B-cell) Primary hematopoietic stem cells G-CSF-mobilized Male
E062 (Blood & T-cell) Primary mononuclear cells from peripheral blood
E115 (ENCODE2012) Dnd41 TCell Leukemia Cell Line
E116 (ENCODE2012) GM12878 Lymphoblastoid Cells
E123 (ENCODE2012) K562 Leukemia Cells
E124 (ENCODE2012) Monocytes-CD14+ RO01746 Primary Cells
Bone (1)
E129 (ENCODE2012) Osteoblast Primary Cells
Brain (13)
E053 (Neurosph) Cortex derived primary cultured neurospheres
E054 (Neurosph) Ganglion Eminence derived primary cultured neurospheres
E067 (Brain) Brain Angular Gyrus
E068 (Brain) Brain Anterior Caudate
E069 (Brain) Brain Cingulate Gyrus
E070 (Brain) Brain Germinal Matrix
E071 (Brain) Brain Hippocampus Middle
E072 (Brain) Brain Inferior Temporal Lobe
E073 (Brain) Brain Dorsolateral Prefrontal Cortex
E074 (Brain) Brain Substantia Nigra
E081 (Brain) Fetal Brain Male
E082 (Brain) Fetal Brain Female
E125 (ENCODE2012) NH-A Astrocytes Primary Cells
Breast (3)
E027 (Epithelial) Breast Myoepithelial Primary Cells
E028 (Epithelial) Breast variant Human Mammary Epithelial Cells (vHMEC)
E119 (ENCODE2012) HMEC Mammary Epithelial Primary Cells
Cervix (1)
E117 (ENCODE2012) HeLa-S3 Cervical Carcinoma Cell Line
ESC (8)
E001 (ESC) ES-I3 Cells
E002 (ESC) ES-WA7 Cells
E003 (ESC) H1 Cells
E008 (ESC) H9 Cells
E014 (ESC) HUES48 Cells
E015 (ESC) HUES6 Cells
E016 (ESC) HUES64 Cells
E024 (ESC) ES-UCSF4 Cells
ESC Derived (9)
E004 (ES-deriv) H1 BMP4 Derived Mesendoderm Cultured Cells
E005 (ES-deriv) H1 BMP4 Derived Trophoblast Cultured Cells
E006 (ES-deriv) H1 Derived Mesenchymal Stem Cells
E007 (ES-deriv) H1 Derived Neuronal Progenitor Cultured Cells
E009 (ES-deriv) H9 Derived Neuronal Progenitor Cultured Cells
E010 (ES-deriv) H9 Derived Neuron Cultured Cells
E011 (ES-deriv) hESC Derived CD184+ Endoderm Cultured Cells
E012 (ES-deriv) hESC Derived CD56+ Ectoderm Cultured Cells
E013 (ES-deriv) hESC Derived CD56+ Mesoderm Cultured Cells
Fat (3)
E023 (Mesench) Mesenchymal Stem Cell Derived Adipocyte Cultured Cells
E025 (Mesench) Adipose Derived Mesenchymal Stem Cell Cultured Cells
E063 (Adipose) Adipose Nuclei
GI Colon (3)
E075 (Digestive) Colonic Mucosa
E076 (Sm. Muscle) Colon Smooth Muscle
E106 (Digestive) Sigmoid Colon
GI Duodenum (2)
E077 (Digestive) Duodenum Mucosa
E078 (Sm. Muscle) Duodenum Smooth Muscle
GI Esophagus (1)
E079 (Digestive) Esophagus
GI Intestine (3)
E084 (Digestive) Fetal Intestine Large
E085 (Digestive) Fetal Intestine Small
E109 (Digestive) Small Intestine
GI Rectum (3)
E101 (Digestive) Rectal Mucosa Donor 29
E102 (Digestive) Rectal Mucosa Donor 31
E103 (Sm. Muscle) Rectal Smooth Muscle
GI Stomach (4)
E092 (Digestive) Fetal Stomach
E094 (Digestive) Gastric
E110 (Digestive) Stomach Mucosa
E111 (Sm. Muscle) Stomach Smooth Muscle
Heart (4)
E083 (Heart) Fetal Heart
E095 (Heart) Left Ventricle
E104 (Heart) Right Atrium
E105 (Heart) Right Ventricle
Kidney (1)
E086 (Other) Fetal Kidney
Liver (2)
E066 (Other) Liver
E118 (ENCODE2012) HepG2 Hepatocellular Carcinoma Cell Line
Lung (5)
E017 (IMR90) IMR90 fetal lung fibroblasts Cell Line
E088 (Other) Fetal Lung
E096 (Other) Lung
E114 (ENCODE2012) A549 EtOH 0.02pct Lung Carcinoma Cell Line
E128 (ENCODE2012) NHLF Lung Fibroblast Primary Cells
Muscle (7)
E052 (Myosat) Muscle Satellite Cultured Cells
E089 (Muscle) Fetal Muscle Trunk
E100 (Muscle) Psoas Muscle
E107 (Muscle) Skeletal Muscle Male
E108 (Muscle) Skeletal Muscle Female
E120 (ENCODE2012) HSMM Skeletal Muscle Myoblasts Cells
E121 (ENCODE2012) HSMM cell derived Skeletal Muscle Myotubes Cells
Muscle Leg (1)
E090 (Muscle) Fetal Muscle Leg
Ovary (1)
E097 (Other) Ovary
Pancreas (2)
E087 (Other) Pancreatic Islets
E098 (Other) Pancreas
Placenta (2)
E091 (Other) Placenta
E099 (Other) Placenta Amnion
Skin (8)
E055 (Epithelial) Foreskin Fibroblast Primary Cells skin01
E056 (Epithelial) Foreskin Fibroblast Primary Cells skin02
E057 (Epithelial) Foreskin Keratinocyte Primary Cells skin02
E058 (Epithelial) Foreskin Keratinocyte Primary Cells skin03
E059 (Epithelial) Foreskin Melanocyte Primary Cells skin01
E061 (Epithelial) Foreskin Melanocyte Primary Cells skin03
E126 (ENCODE2012) NHDF-Ad Adult Dermal Fibroblast Primary Cells
E127 (ENCODE2012) NHEK-Epidermal Keratinocyte Primary Cells
Spleen (1)
E113 (Other) Spleen
Stromal Connective (2)
E026 (Mesench) Bone Marrow Derived Cultured Mesenchymal Stem Cells
E049 (Mesench) Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells
Thymus (2)
E093 (Thymus) Fetal Thymus
E112 (Thymus) Thymus
Vascular (2)
E065 (Heart) Aorta
E122 (ENCODE2012) HUVEC Umbilical Vein Endothelial Primary Cells
iPSC (5)
E018 (iPSC) iPS-15b Cells
E019 (iPSC) iPS-18 Cells
E020 (iPSC) iPS-20b Cells
E021 (iPSC) iPS DF 6.9 Cells
E022 (iPSC) iPS DF 19.11 Cells

PsychENCODE (6)
Enhancers
High confidence enhancers
Prefrontal Cortex (PFC) H3K27ac
Temporal Cortex (TC) H3K27ac
Cerebellar Cortex (CBC) H3K27ac
Transcriptionally Active Regions (TARs)
FANTOM5 (5)
Transcription start sites
Permissive CAGE perks
Robust CAGE perks
Permissive enhancers
Robust enhancers
Brain Open Chromatin Atlas (28)
Neuron from Dorsolateral prefrontal cortex (DLPFC)
Glia from Dorsolateral prefrontal cortex (DLPFC)
Neuron from Orbitofrontal cortex (OFC)
Glia from Orbitofrontal cortex (OFC)
Neuron from Ventrolatelar prefrontal cortex (VLPFC)
Glia from Ventrolatelar prefrontal cortex (VLPFC)
Neuron from Anterior cingulate cortex (ACC)
Glia from Anterior cingulate cortex (ACC)
Neuron from Superior temporal cortex (STC)
Glia from Superior temporal cortex (STC)
Neuron from Inferior temporal cortex (ITC)
Glia from Inferior temporal cortex (ITC)
Neuron from Primary motor cortex (PMC)
Glia from Primary motor cortex (PMC)
Neuron from Insula (INS)
Glia from Insula (INS)
Neuron from Primary visual cortex (PVC)
Glia from Primary visual cortex (PVC)
Neuron from Amygdala (AMY)
Glia from Amygdala (AMY)
Neuron from Hippocampus (HIPP)
Glia from Hippocampus (HIPP)
Neuron from Mediodorsal thalamus (MDT)
Glia from Mediodorsal thalamus (MDT)
Neuron from Nucleus accumbens (NAC)
Glia from Nucleus accumbens (NAC)
Neuron from Putamen (PUT)
Glia from Putamen (PUT)

All
Adrenal (1)
E080 (Other) Fetal Adrenal Gland
Blood (27)
E029 (HSC & B-cell) Primary monocytes from peripheral blood
E030 (HSC & B-cell) Primary neutrophils from peripheral blood
E031 (HSC & B-cell) Primary B cells from cord blood
E032 (HSC & B-cell) Primary B cells from peripheral blood
E033 (Blood & T-cell) Primary T cells from cord blood
E034 (Blood & T-cell) Primary T cells from peripheral blood
E035 (HSC & B-cell) Primary hematopoietic stem cells
E036 (HSC & B-cell) Primary hematopoietic stem cells short term culture
E037 (Blood & T-cell) Primary T helper memory cells from peripheral blood 2
E038 (Blood & T-cell) Primary T helper naive cells from peripheral blood
E039 (Blood & T-cell) Primary T helper naive cells from peripheral blood
E040 (Blood & T-cell) Primary T helper memory cells from peripheral blood 1
E041 (Blood & T-cell) Primary T helper cells PMA-I stimulated
E042 (Blood & T-cell) Primary T helper 17 cells PMA-I stimulated
E043 (Blood & T-cell) Primary T helper cells from peripheral blood
E044 (Blood & T-cell) Primary T regulatory cells from peripheral blood
E045 (Blood & T-cell) Primary T cells effector/memory enriched from peripheral blood
E046 (HSC & B-cell) Primary Natural Killer cells from peripheral blood
E047 (Blood & T-cell) Primary T CD8+ naive cells from peripheral blood
E048 (Blood & T-cell) Primary T CD8+ memory cells from peripheral blood
E050 (HSC & B-cell) Primary hematopoietic stem cells G-CSF-mobilized Female
E051 (HSC & B-cell) Primary hematopoietic stem cells G-CSF-mobilized Male
E062 (Blood & T-cell) Primary mononuclear cells from peripheral blood
E115 (ENCODE2012) Dnd41 TCell Leukemia Cell Line
E116 (ENCODE2012) GM12878 Lymphoblastoid Cells
E123 (ENCODE2012) K562 Leukemia Cells
E124 (ENCODE2012) Monocytes-CD14+ RO01746 Primary Cells
Bone (1)
E129 (ENCODE2012) Osteoblast Primary Cells
Brain (13)
E053 (Neurosph) Cortex derived primary cultured neurospheres
E054 (Neurosph) Ganglion Eminence derived primary cultured neurospheres
E067 (Brain) Brain Angular Gyrus
E068 (Brain) Brain Anterior Caudate
E069 (Brain) Brain Cingulate Gyrus
E070 (Brain) Brain Germinal Matrix
E071 (Brain) Brain Hippocampus Middle
E072 (Brain) Brain Inferior Temporal Lobe
E073 (Brain) Brain Dorsolateral Prefrontal Cortex
E074 (Brain) Brain Substantia Nigra
E081 (Brain) Fetal Brain Male
E082 (Brain) Fetal Brain Female
E125 (ENCODE2012) NH-A Astrocytes Primary Cells
Breast (3)
E027 (Epithelial) Breast Myoepithelial Primary Cells
E028 (Epithelial) Breast variant Human Mammary Epithelial Cells (vHMEC)
E119 (ENCODE2012) HMEC Mammary Epithelial Primary Cells
Cervix (1)
E117 (ENCODE2012) HeLa-S3 Cervical Carcinoma Cell Line
ESC (8)
E001 (ESC) ES-I3 Cells
E002 (ESC) ES-WA7 Cells
E003 (ESC) H1 Cells
E008 (ESC) H9 Cells
E014 (ESC) HUES48 Cells
E015 (ESC) HUES6 Cells
E016 (ESC) HUES64 Cells
E024 (ESC) ES-UCSF4 Cells
ESC Derived (9)
E004 (ES-deriv) H1 BMP4 Derived Mesendoderm Cultured Cells
E005 (ES-deriv) H1 BMP4 Derived Trophoblast Cultured Cells
E006 (ES-deriv) H1 Derived Mesenchymal Stem Cells
E007 (ES-deriv) H1 Derived Neuronal Progenitor Cultured Cells
E009 (ES-deriv) H9 Derived Neuronal Progenitor Cultured Cells
E010 (ES-deriv) H9 Derived Neuron Cultured Cells
E011 (ES-deriv) hESC Derived CD184+ Endoderm Cultured Cells
E012 (ES-deriv) hESC Derived CD56+ Ectoderm Cultured Cells
E013 (ES-deriv) hESC Derived CD56+ Mesoderm Cultured Cells
Fat (3)
E023 (Mesench) Mesenchymal Stem Cell Derived Adipocyte Cultured Cells
E025 (Mesench) Adipose Derived Mesenchymal Stem Cell Cultured Cells
E063 (Adipose) Adipose Nuclei
GI Colon (3)
E075 (Digestive) Colonic Mucosa
E076 (Sm. Muscle) Colon Smooth Muscle
E106 (Digestive) Sigmoid Colon
GI Duodenum (2)
E077 (Digestive) Duodenum Mucosa
E078 (Sm. Muscle) Duodenum Smooth Muscle
GI Esophagus (1)
E079 (Digestive) Esophagus
GI Intestine (3)
E084 (Digestive) Fetal Intestine Large
E085 (Digestive) Fetal Intestine Small
E109 (Digestive) Small Intestine
GI Rectum (3)
E101 (Digestive) Rectal Mucosa Donor 29
E102 (Digestive) Rectal Mucosa Donor 31
E103 (Sm. Muscle) Rectal Smooth Muscle
GI Stomach (4)
E092 (Digestive) Fetal Stomach
E094 (Digestive) Gastric
E110 (Digestive) Stomach Mucosa
E111 (Sm. Muscle) Stomach Smooth Muscle
Heart (4)
E083 (Heart) Fetal Heart
E095 (Heart) Left Ventricle
E104 (Heart) Right Atrium
E105 (Heart) Right Ventricle
Kidney (1)
E086 (Other) Fetal Kidney
Liver (2)
E066 (Other) Liver
E118 (ENCODE2012) HepG2 Hepatocellular Carcinoma Cell Line
Lung (5)
E017 (IMR90) IMR90 fetal lung fibroblasts Cell Line
E088 (Other) Fetal Lung
E096 (Other) Lung
E114 (ENCODE2012) A549 EtOH 0.02pct Lung Carcinoma Cell Line
E128 (ENCODE2012) NHLF Lung Fibroblast Primary Cells
Muscle (7)
E052 (Myosat) Muscle Satellite Cultured Cells
E089 (Muscle) Fetal Muscle Trunk
E100 (Muscle) Psoas Muscle
E107 (Muscle) Skeletal Muscle Male
E108 (Muscle) Skeletal Muscle Female
E120 (ENCODE2012) HSMM Skeletal Muscle Myoblasts Cells
E121 (ENCODE2012) HSMM cell derived Skeletal Muscle Myotubes Cells
Muscle Leg (1)
E090 (Muscle) Fetal Muscle Leg
Ovary (1)
E097 (Other) Ovary
Pancreas (2)
E087 (Other) Pancreatic Islets
E098 (Other) Pancreas
Placenta (2)
E091 (Other) Placenta
E099 (Other) Placenta Amnion
Skin (8)
E055 (Epithelial) Foreskin Fibroblast Primary Cells skin01
E056 (Epithelial) Foreskin Fibroblast Primary Cells skin02
E057 (Epithelial) Foreskin Keratinocyte Primary Cells skin02
E058 (Epithelial) Foreskin Keratinocyte Primary Cells skin03
E059 (Epithelial) Foreskin Melanocyte Primary Cells skin01
E061 (Epithelial) Foreskin Melanocyte Primary Cells skin03
E126 (ENCODE2012) NHDF-Ad Adult Dermal Fibroblast Primary Cells
E127 (ENCODE2012) NHEK-Epidermal Keratinocyte Primary Cells
Spleen (1)
E113 (Other) Spleen
Stromal Connective (2)
E026 (Mesench) Bone Marrow Derived Cultured Mesenchymal Stem Cells
E049 (Mesench) Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells
Thymus (2)
E093 (Thymus) Fetal Thymus
E112 (Thymus) Thymus
Vascular (2)
E065 (Heart) Aorta
E122 (ENCODE2012) HUVEC Umbilical Vein Endothelial Primary Cells
iPSC (5)
E018 (iPSC) iPS-15b Cells
E019 (iPSC) iPS-18 Cells
E020 (iPSC) iPS-20b Cells
E021 (iPSC) iPS DF 6.9 Cells
E022 (iPSC) iPS DF 19.11 Cells

Browse Public Results

This is an example page of SNP2GENE job submission. All input options are disabled in this page. Please register to submit your own job.

0. Job configuration

1. Upload input files

2. Parameters for lead SNPs and candidate SNPs identification

3-1. Gene Mapping (positional mapping)

Positional mapping

3-2. Gene Mapping (xQTLs mapping)

Adipose

Adrenal Gland

Artery

Bladder

Blood

Brain

Breast

Colon

Esophagus

Heart

Kidney

Liver

Lung

Muscle

Nerve

Ovary

Pancreas

Pituitary

Prostate

Salivary Gland

Skin

Small Intestine

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Adipose

Adrenal Gland

Artery

Bladder

Blood

Brain

Breast

Colon

Esophagus

Heart

Kidney

Liver

Lung

Muscle

Nerve

Ovary

Pancreas

Pituitary

Prostate

Salivary Gland

Skin

Small Intestine

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Plasma

Brain

Cerebrospinal fluid (CSF)

Brain

Optional SNP filtering by functional annotation for eQTL mapping

3-3. Gene Mapping (3D Chromatin Interaction mapping)

chromatin interaction mapping

4. Gene types

5. MHC region

6. MAGMA analysis

Manhattan Plot (GWAS summary statistics)

Manhattan Plot (gene-based test)

QQ plot (GWAS summary statisics)

QQ plot (gene-based test)

MAGMA Gene-Set Analysis

MAGMA Tissue Expression Analysis