Please click the download symbol in the third column to download the data files.
| Data source | Used for | Download size |
|---|---|---|
| Gene-set files | ||
| MSigDB v7.0 gene-set file | MAGMA gene-set analysis file used in SNP2GENE from FUMA version 1.3.5d to 1.5.5. |  22M |
| MSigDB v2023.1Hs gene-set file | MAGMA gene-set analysis file used in SNP2GENE from FUMA version 1.5.6 onwards. | 24M |
| MSigDB and GWAS catalog gene-set files | Gene-set analysis files used in GENE2FUNC from FUMA version 1.3.5d to 1.5.5. | 22M |
| MSigDB and GWAS catalog gene-set files | Gene-set analysis files used in GENE2FUNC from FUMA version 1.5.6 onwards. | 29M |
| Gene expression files | ||
| GTEx v8 general expression differentially expressed genes | The gene-set of the differentially expressed genes in GTEx v8 across 30 tissues. This file is used for GENE2FUNC tissue specificity analysis. | 6M |
| GTEx v8 specific expression differentially expressed genes | The gene-set of the differentially expressed genes in GTEx v8 across 54 tissues. This file is used for GENE2FUNC tissue specificity analysis. | 12M |
| GTEx v7 general expression differentially expressed genes | The gene-set of the differentially expressed genes in GTEx v7 across 30 tissues. This file is used for GENE2FUNC tissue specificity analysis. | 6M |
| GTEx v7 specific expression differentially expressed genes | The gene-set of the differentially expressed genes in GTEx v7 across 54 tissues. This file is used for GENE2FUNC tissue specificity analysis. | 11M |
| GTEx v6 general expression differentially expressed genes | The gene-set of the differentially expressed genes in GTEx v6 across 30 tissues. This file is used for GENE2FUNC tissue specificity analysis. | 4M |
| GTEx v6 specific expression differentially expressed genes | The gene-set of the differentially expressed genes in GTEx v6 across 54 tissues. This file is used for GENE2FUNC tissue specificity analysis. | 8M |
| GTEx v8 general gene expression | The gene expression values in GTEx v8 across 30 tissues. This file is used for SNP2GENE MAGMA Tissue Expression Analysis. | 18M |
| GTEx v8 specific gene expression | The gene expression values in GTEx v8 across 54 tissues. This file is used for SNP2GENE MAGMA Tissue Expression Analysis. | 32M |
| GTEx v7 general gene expression | The gene expression values in GTEx v7 across 30 tissues. This file is used for SNP2GENE MAGMA Tissue Expression Analysis. | 18M |
| GTEx v7 specific gene expression | The gene expression values in GTEx v7 across 54 tissues. This file is used for SNP2GENE MAGMA Tissue Expression Analysis. | 30M |
| GTEx v6 general gene expression | The gene expression values in GTEx v6 across 30 tissues. This file is used for SNP2GENE MAGMA Tissue Expression Analysis. | 16M |
| GTEx v6 specific gene expression | The gene expression values in GTEx v6 across 54 tissues. This file is used for SNP2GENE MAGMA Tissue Expression Analysis. | 24M |
MAGMA gene boundary files |
| MAGMA gene boundaries Ensembl v85 | This file defines gene boundaries and is used to map variants to genes in the SNP2GENE MAGMA analysis. Gene locations are GRCh37 and are based on Ensembl v85. | 1M |
| MAGMA gene boundaries Ensembl v92 | This file defines gene boundaries and is used to map variants to genes in the SNP2GENE MAGMA analysis. Gene locations are GRCh37 and are based on Ensembl v92. | 1M |
| MAGMA gene boundaries Ensembl v102 | This file defines gene boundaries and is used to map variants to genes in the SNP2GENE MAGMA analysis. Gene locations are GRCh37 and are based on Ensembl v102. | 1M |
| MAGMA gene boundaries Ensembl v110 | This file defines gene boundaries and is used to map variants to genes in the SNP2GENE MAGMA analysis. Gene locations are GRCh37 and are based on Ensembl v110. | 1M |
MAGMA files |
| MAGMA European | The reference data files are created from Phase 3 of 1,000 Genomes. The SNP locations in the data are in reference to human genome Build 37. |
(.bim) 808M
(.bed) 2.94G
(.fam) 12K
|
| MAGMA African | The reference data files are created from Phase 3 of 1,000 Genomes. The SNP locations in the data are in reference to human genome Build 37. |
(.bim) 1.37G
(.bed) 6.75G
(.fam) 16K
|
| MAGMA East Asian | The reference data files are created from Phase 3 of 1,000 Genomes. The SNP locations in the data are in reference to human genome Build 37. |
(.bim) 789M
(.bed) 2.87G
(.fam) 12K
|
| MAGMA South Asian | The reference data files are created from Phase 3 of 1,000 Genomes. The SNP locations in the data are in reference to human genome Build 37. |
(.bim) 891M
(.bed) 3.17G
(.fam) 12K
|
| MAGMA Middle/South American | The reference data files are created from Phase 3 of 1,000 Genomes. The SNP locations in the data are in reference to human genome Build 37. |
(.bim) 951M
(.bed) 2.38G
(.fam) 8K
|
| MAGMA All populations | The reference data files are created from Phase 3 of 1,000 Genomes. The SNP locations in the data are in reference to human genome Build 37. |
(.bim) 2.65G
(.bed) 49.4G
(.fam) 61K
|
GRCh38 to rsID |
| GRCh38 unique ID and rsID file | This file is used to convert GRCh38 chromosome and position to rsID in the SNP2GENE analysis. The rsID is based on dbSNP v152. | 708M |
Reference panel data |
| 1000 genomes ALL variants | This file is a list of the variants included in the 1KG ALL reference panel used in the SNP2GENE analysis. | 870M |
| 1000 genomes AFR variants | This file is a list of the variants included in the 1KG AFR reference panel used in the SNP2GENE analysis. | 461M |
| 1000 genomes AMR variants | This file is a list of the variants included in the 1KG AMR reference panel used in the SNP2GENE analysis. | 305M |
| 1000 genomes EAS variants | This file is a list of the variants included in the 1KG EAS reference panel used in the SNP2GENE analysis. | 254M |
| 1000 genomes EUR variants | This file is a list of the variants included in the 1KG EUR reference panel used in the SNP2GENE analysis. | 260M |
| 1000 genomes SAS variants | This file is a list of the variants included in the 1KG SAS reference panel used in the SNP2GENE analysis. | 287M |